171 lines
4.3 KiB
Plaintext
171 lines
4.3 KiB
Plaintext
# Entropy Matter, Automated Entropy Packages Build Service, example spec file
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# List of packages required to be built.
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# Comma separated, example: app-foo/bar, bar-baz/foo
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# Mandatory, cannot be empty
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packages:
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sci-biology/GBrowse,
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sci-biology/aaindex,
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sci-biology/abyss,
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sci-biology/amos,
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sci-biology/ariadne,
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sci-biology/augustus,
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sci-biology/bfast,
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sci-biology/biogrep,
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sci-biology/bioperl,
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sci-biology/bioperl-db,
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sci-biology/bioperl-network,
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sci-biology/bioperl-run,
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sci-biology/biopython,
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sci-biology/bioruby,
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sci-biology/biosql,
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sci-biology/blat,
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sci-biology/blossoc,
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sci-biology/bowtie,
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sci-biology/bwa,
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sci-biology/cd-hit,
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sci-biology/clustal-omega,
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sci-biology/clustalw,
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sci-biology/clustalw-mpi,
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sci-biology/clustalx,
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sci-biology/cutg,
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sci-biology/dialign-tx,
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sci-biology/elph,
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sci-biology/embassy,
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sci-biology/emboss,
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sci-biology/eugene,
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sci-biology/exonerate,
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sci-biology/fasta,
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sci-biology/fasttree,
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sci-biology/finchtv,
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sci-biology/foldingathome,
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sci-biology/gibbs,
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sci-biology/gmap,
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sci-biology/goby-cpp,
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sci-biology/hmmer,
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sci-biology/iedera,
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sci-biology/infernal,
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sci-biology/iqpnni,
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sci-biology/kalign,
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sci-biology/lagan,
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sci-biology/last,
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sci-biology/mafft,
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sci-biology/maq,
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sci-biology/maqview,
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sci-biology/mcl,
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sci-biology/meme,
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sci-biology/mosaik,
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sci-biology/mothur,
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sci-biology/mrbayes,
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sci-biology/mummer,
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sci-biology/muscle,
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sci-biology/ncbi-tools,
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sci-biology/njplot,
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sci-biology/pals,
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sci-biology/paml,
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sci-biology/phylip,
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sci-biology/phyml,
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sci-biology/piler,
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sci-biology/pilercr,
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sci-biology/plink,
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sci-biology/poa,
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sci-biology/prank,
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sci-biology/primer3,
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sci-biology/prints,
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sci-biology/prosite,
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sci-biology/qrna,
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sci-biology/raxml,
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sci-biology/readseq,
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sci-biology/rebase,
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sci-biology/recon,
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sci-biology/rnaview,
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sci-biology/samtools,
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sci-biology/shrimp,
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sci-biology/sibsim4,
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sci-biology/sim4,
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sci-biology/snpfile,
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sci-biology/stride,
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sci-biology/t-coffee,
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sci-biology/transfac,
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sci-biology/tree-puzzle,
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sci-biology/treeviewx,
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sci-biology/trnascan-se,
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sci-biology/ucsc-genome-browser,
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sci-biology/unafold,
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sci-biology/vaal,
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sci-biology/velvet,
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sci-biology/vienna-rna,
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sci-biology/wise,
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sci-biology/yass
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# Entropy repository where to commit packages
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# Mandatory, cannot be empty
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repository: sabayon-hell
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# Allow Source Package Manager (Portage) repository change?
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# Valid values are either "yes" or "no"
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# Default is: no
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spm-repository-change: no
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# Allow compiling package even if it's not actually installed on system?
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# Valid values are either "yes" or "no"
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# Default is: no
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not-installed: no
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# Allow dependencies to be pulled in?
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# Valid values are either "yes" or "no"
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# Default is: no
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dependencies: yes
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# Allow package downgrade?
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# Valid values are either "yes" or "no"
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# Default is: no
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downgrade: no
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# Allow package rebuild?
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# Valid values are either "yes" or "no"
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# Default is: no
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rebuild: no
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# Make possible to continue if one or more packages fail to build?
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# Valid values are either "yes" or "no"
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# Default is: no
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keep-going: yes
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# Allow new USE flags?
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# Valid values are either "yes" or "no"
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# Default is: no
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new-useflags: yes
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# Allow removed USE flags?
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# Valid values are either "yes" or "no"
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# Default is: no
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removed-useflags: yes
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# Package pre execution script hook
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# Valid value is path to executable file
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# Env vars:
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# BUILDER_PACKAGE_NAME = name of the package that would be built
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# pkgpre: /home/fabio/repos/entropy/services/matter_examples/pkgpre.sh
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# Package build post execution script hook, executed for each package
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# Valid value is path to executable file
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# Env vars:
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# BUILDER_PACKAGE_NAME = name of the package that would be built
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# pkgpost: /home/fabio/repos/entropy/services/matter_examples/pkgpost.sh
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# Env vars:
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# MATTER_PACKAGE_NAME = name of the package that would be built. It does
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# not reflect the name of the failing package, because it could be just a
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# dependency of it.
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# MATTER_PORTAGE_FAILED_PACKAGE_NAME = exact name (atom, CPV) of the failing
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# package, the one that triggered the buildfail hook.
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# MATTER_PORTAGE_REPOSITORY = Portage repository from where the package
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# comes from
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# MATTER_PORTAGE_BUILD_LOG_DIR = directory containing all the build logs of
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# the failed package
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buildfail: /particles/hooks/buildfail.sh
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# For more info regarding exported environment variables, please see:
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# matter --help
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