# Entropy Matter, Automated Entropy Packages Build Service, example spec file

# List of packages required to be built.
# Comma separated, example: app-foo/bar, bar-baz/foo
# Mandatory, cannot be empty
packages:
	sci-biology/GBrowse,
	sci-biology/aaindex,
	sci-biology/abyss,
	sci-biology/amos,
	sci-biology/ariadne,
	sci-biology/augustus,
	sci-biology/bfast,
	sci-biology/biogrep,
	sci-biology/bioperl,
	sci-biology/bioperl-db,
	sci-biology/bioperl-network,
	sci-biology/bioperl-run,
	sci-biology/biopython,
	sci-biology/bioruby,
	sci-biology/biosql,
	sci-biology/blat,
	sci-biology/blossoc,
	sci-biology/bowtie,
	sci-biology/bwa,
	sci-biology/cd-hit,
	sci-biology/clustal-omega,
	sci-biology/clustalw,
	sci-biology/clustalw-mpi,
	sci-biology/clustalx,
	sci-biology/cutg,
	sci-biology/dialign-tx,
	sci-biology/elph,
	sci-biology/embassy,
	sci-biology/emboss,
	sci-biology/eugene,
	sci-biology/exonerate,
	sci-biology/fasta,
	sci-biology/fasttree,
	sci-biology/finchtv,
	sci-biology/foldingathome,
	sci-biology/gibbs,
	sci-biology/gmap,
	sci-biology/goby-cpp,
	sci-biology/hmmer,
	sci-biology/iedera,
	sci-biology/infernal,
	sci-biology/iqpnni,
	sci-biology/kalign,
	sci-biology/lagan,
	sci-biology/last,
	sci-biology/mafft,
	sci-biology/maq,
	sci-biology/maqview,
	sci-biology/mcl,
	sci-biology/meme,
	sci-biology/mosaik,
	sci-biology/mothur,
	sci-biology/mrbayes,
	sci-biology/mummer,
	sci-biology/muscle,
	sci-biology/ncbi-tools,
	sci-biology/njplot,
	sci-biology/pals,
	sci-biology/paml,
	sci-biology/phylip,
	sci-biology/phyml,
	sci-biology/piler,
	sci-biology/pilercr,
	sci-biology/plink,
	sci-biology/poa,
	sci-biology/prank,
	sci-biology/primer3,
	sci-biology/prints,
	sci-biology/prosite,
	sci-biology/qrna,
	sci-biology/raxml,
	sci-biology/readseq,
	sci-biology/rebase,
	sci-biology/recon,
	sci-biology/rnaview,
	sci-biology/samtools,
	sci-biology/shrimp,
	sci-biology/sibsim4,
	sci-biology/sim4,
	sci-biology/snpfile,
	sci-biology/stride,
	sci-biology/t-coffee,
	sci-biology/transfac,
	sci-biology/tree-puzzle,
	sci-biology/treeviewx,
	sci-biology/trnascan-se,
	sci-biology/ucsc-genome-browser,
	sci-biology/unafold,
	sci-biology/vaal,
	sci-biology/velvet,
	sci-biology/vienna-rna,
	sci-biology/wise,
	sci-biology/yass

# Entropy repository where to commit packages
# Mandatory, cannot be empty
repository: sabayon-hell

# Allow Source Package Manager (Portage) repository change?
# Valid values are either "yes" or "no"
# Default is: no
spm-repository-change: no

# Allow compiling package even if it's not actually installed on system?
# Valid values are either "yes" or "no"
# Default is: no
not-installed: no

# Allow dependencies to be pulled in?
# Valid values are either "yes" or "no"
# Default is: no
dependencies: yes

# Allow package downgrade?
# Valid values are either "yes" or "no"
# Default is: no
downgrade: no

# Allow package rebuild?
# Valid values are either "yes" or "no"
# Default is: no
rebuild: no

# Make possible to continue if one or more packages fail to build?
# Valid values are either "yes" or "no"
# Default is: no
keep-going: yes

# Allow new USE flags?
# Valid values are either "yes" or "no"
# Default is: no
new-useflags: yes

# Allow removed USE flags?
# Valid values are either "yes" or "no"
# Default is: no
removed-useflags: yes

# Package pre execution script hook
# Valid value is path to executable file
# Env vars:
# BUILDER_PACKAGE_NAME       = name of the package that would be built
# pkgpre: /home/fabio/repos/entropy/services/matter_examples/pkgpre.sh

# Package build post execution script hook, executed for each package
# Valid value is path to executable file
# Env vars:
# BUILDER_PACKAGE_NAME       = name of the package that would be built
# pkgpost: /home/fabio/repos/entropy/services/matter_examples/pkgpost.sh

# Env vars:
# MATTER_PACKAGE_NAME       = name of the package that would be built. It does
# not reflect the name of the failing package, because it could be just a
# dependency of it.
# MATTER_PORTAGE_FAILED_PACKAGE_NAME = exact name (atom, CPV) of the failing
# package, the one that triggered the buildfail hook.
# MATTER_PORTAGE_REPOSITORY = Portage repository from where the package
# comes from
# MATTER_PORTAGE_BUILD_LOG_DIR = directory containing all the build logs of
# the failed package
buildfail: /particles/hooks/buildfail.sh

# For more info regarding exported environment variables, please see:
# matter --help