diff --git a/libraries/entropy/db.py b/libraries/entropy/db.py
index 9caea558d..4cd64564d 100644
--- a/libraries/entropy/db.py
+++ b/libraries/entropy/db.py
@@ -4638,6 +4638,7 @@ class LocalRepository:
         mydata = set()
         am = self.atomMatch
         up = self.updateProgress
+        self.clearDependsTable()
         for iddep, atom in depends:
             count += 1