diff --git a/libraries/entropyTools.py b/libraries/entropyTools.py
index c7109a47c..44bc7ec26 100644
--- a/libraries/entropyTools.py
+++ b/libraries/entropyTools.py
@@ -701,7 +701,7 @@ def alphaSorter(seq):
 # Temporary files cleaner
 def cleanup(options):
 
-    toCleanDirs = [ etpConst['packagestmpdir'] ]
+    toCleanDirs = [ etpConst['packagestmpdir'], etpConst['logdir'] ]
     counter = 0
 
     for dir in toCleanDirs: