diff --git a/Makefile.am b/Makefile.am
index dff40ad..66a2988 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -134,7 +134,6 @@ include_subdirs =				\
 	src/apps/config				\
 	src/apps/manager			\
 	src/apps/sendmail			\
-	src/apps/setup				\
 	src/apps/queuetool			\
 	src/apps/storetool			\
 	src/apps/storetool/demo			\
@@ -192,7 +191,6 @@ include src/apps/backup/Bongo.rules
 include src/apps/config/Bongo.rules
 include src/apps/manager/Bongo.rules
 include src/apps/sendmail/Bongo.rules
-include src/apps/setup/Bongo.rules
 # include src/apps/migrate/Bongo.rules
 include src/apps/queuetool/Bongo.rules
 include src/apps/storetool/Bongo.rules
diff --git a/configure.ac b/configure.ac
index 6d7dfaa..7649175 100644
--- a/configure.ac
+++ b/configure.ac
@@ -664,8 +664,6 @@ src/agents/queue/Makefile
 src/agents/smtp/Makefile
 src/agents/store/Makefile
 src/agents/store/tests/Makefile
-src/apps/setup/Makefile
-src/apps/setup/bongo-setup.xml
 src/apps/manager/Makefile
 src/apps/admin/Makefile
 src/apps/config/Makefile